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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0096s0012.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GATA | ||||||||
Protein Properties | Length: 525aa MW: 59080.1 Da PI: 6.5677 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.9 | 2.1e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Kaladp0096s0012.2.p 7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41 ****************55555***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 5.4E-8 | 1 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.65E-11 | 6 | 45 | No hit | No description |
CDD | cd00202 | 2.45E-16 | 6 | 53 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.3E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.345 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.2E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 2.3E-9 | 290 | 373 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
MVKQGPCRHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLTNYTPLHA RAEELDEYED 60 YKASRVRVVN VNKPKEVKLQ KRKRNRNSDV VELGGDFHNY SHSYRRFVDD DTSNRSSSGS 120 GVSNSESFGP FSSTVGSDLT GPEQSVGWEA TVPSKKRTCF GRSKPSPIEK FTQELYTIWQ 180 EQQSYCPESP EEELLYESET PMVSVEIGHG SVLIKHPSEI AHEEDSEASS LSAEVKPYPR 240 TEAHLRPATL FVHKEDKGAA AFQAPRAVKS IRISNPPLMN REQSYRNEAA NVHDIQHLLG 300 RRDSPLCAVD LNDIVNLEEF AAQFTTQEQQ QLLKYLPKSD VERYPISLKS LFDDPLFQES 360 LLSFQRLLAE GVFDLSFPNV EPDDCRNLRR LALSNPLKPN WVALYNLLKS KNRPAAHNVT 420 GSNVMELAKL SQKSQKSGSN LLSKDLNTVK LKHTTQAKEF ADTDRTDFHP KNIFAPPSEN 480 PVSRVTQPLH DADMENDQDL LLDVPSNYAF PQAELLDPNQ CLYR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006385556.1 | 1e-174 | hypothetical protein POPTR_0003s08080g | ||||
TrEMBL | A9PFA9 | 1e-174 | A9PFA9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s08080.1 | 1e-173 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 9e-86 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0096s0012.2.p |